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2013

 
  2013年发表的论文
1 Cho Yi, Dong Xiuzhu*. Mechanism for stabilizing mRNAs involved in methanol-dependent methanogenesis of cold adaptive Methanosarcina mazei zm-15. Appl Environ Microbio, 2013 Dec 6.
2 Zhou Liguang, Dong Xiuzhu*. Methanospirillum psychrodurum sp. nov., isolated from the wetland soil of Qinghai-Tibetan Plateau, China. Int J Syst Evol Microbiol, 2013, doi: 10.1099/ijs.0.057299-0.
3 Guomin Ai, Jinxing Zhu, Xiuzhu Dong* and Tong Sun. Simultaneous characterization of methane and carbon dioxide produced by cultured methanogens using gas chromatography/ isotope ratio mass spectrometry and gas chromatography/mass spectrometry. Rapid Commun. Mass Spectrom, 2013, 27, 1935–1944.
4 Cai L, Cai S, Zhao D, Wu J, Wang L, Liu X, Li M, Hou J, Zhou J, Liu J, Han J, Xiang H* (2013) Analysis of the Transcriptional Regulator GlpR, Promoter Elements, and Posttranscriptional Processing Involved in Fructose-Induced Activation of the Phosphoenolpyruvate-Dependent Sugar Phosphotransferase System in Haloferax mediterranei. Appl Environ Microbiol, doi: 10.1128/AEM.03372-13
5
 Han J, Hou J, Zhang F, Ai G, Li M, Cai S, Liu H, Wang L, Wang Z, Zhang S, Cai L, Zhao D, Zhou J, Xiang H*. (2013) Multiple Propionyl Coenzyme A-Supplying Pathways for Production of the Bioplastic Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) in Haloferax mediterranei. Appl Environ Microbiol. 79:2922-2931.
6
 Hou J, Feng B, Han J, Liu H, Zhao D, Zhou J, Xiang H*. 2013. Haloarchaeal Type β-Ketothiolases Involved in Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) Synthesis in Haloferax mediterranei. Appl Environ Microbiol, 79:5104-5111
7 Hou J, Han J, Cai L, Zhou J, LüY, Jin C, Liu J, Xiang H*. 2013. Characterization of genes for chitin catabolism in Haloferax mediterranei. Appl Microbiol Biotechnol. doi 10.1007/s00253-013-4969-8
8 Li M, Liu H, Han J, Liu J, Wang R, Zhao D, Zhou J, Xiang H*. 2013. Characterization of CRISPR RNA biogenesis and Cas6-cleavage mediated inhibition of a provirus in the haloarchaeon Haloferax mediterranei. J Bacteriol, 195:867-75.
9 Li M, Wang R, Zhao D, Xiang H*.  2013.  Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purified virus strictly requires a priming process. Nucleic Acids Res, doi: 10.1093/nar/gkt1154
10
 Liu H, Luo Y, Han J, Wu J, Wu Z, Feng D, Cai S, Li M, Liu J, Zhou J, Xiang H*. 2013. Proteome reference map of Haloarcula hispanica and comparative proteomic and transcriptomic analysis of polyhydroxyalkanoate biosynthesis under genetic and environmental perturbations. J Proteome Res, 12:1300-15.
11
 Liu X, Miao D, Zhang F, Wu Z, Liu J, Xiang H*. 2013. Characterization of the minimal replicon of pHM300 and independent copy number control of major and minor chromosomes of Haloferax mediterranei. FEMS Microbiol Lett, 339:66-74.
12
 Liu X, Wang L, Liu J, Cai L, Xiang H*. 2013. Genome-wide analysis of gene expression in stationary phase and genetic characterization of stationary-phase-dependent halocin gene expression in the haloarchaeon Haloferax mediterranei. Journal of Genetics and Genomics. 40: 441-444
13 Wu Z, Liu J, Yang H, Liu H, Xiang H*. 2013.  Multiple replication origins with diverse control mechanisms in Haloarcula hispanica. Nucleic Acids Res, doi: 10.1093/nar/gkt1214
14 Zhao D, Cai L, Wu J, Li M, Liu H, Han J, Zhou J, Xiang H*. 2013. Improving polyhydroxyalkanoate production by knocking out the genes involved in exopolysaccharide biosynthesis in Haloferax mediterranei. Appl Microbiol Biotechnol, 97:3027-36.
15
 Liu N., Shang F., Xi L. and Huang Y.*. Tetroazolemycins A and B, two new oxazole-thiazolesiderophores from deep-Sea Streptomyces olivaceus FXJ8.012. Mar Drugs, 11(5): 1524-1533, 2013.
16
 Rong X., Doroghazi J.R., Cheng K., Zhang L., Buckley D.H. and Huang Y. *. Classification of Streptomyces phylogroup pratensis (Doroghazi and Buckley, 2010) based on genetic and phenotypic evidence, and proposal of Streptomyces pratensis sp. nov. Syst Appl Microbiol, 36(6): 401-407, 2013.
17
 Zhang L., Xi L., Qiu D., Song L., Dai X., Ruan J., Huang Y.*. Cellulomonas marina sp. nov., isolated from deep-sea water. Int J Syst Evol Microbiol, 63(8): 3014-3018, 2013.
18 Wang P., Xi L., Liu P., Wang Y., Wang W., Huang Y.* and Zhu W *. Diketopiperazine derivatives from the marine-derived actinomycete Streptomyces sp. FXJ7.328. Mar Drugs, 11(4): 1035-1049, 2013.
19
 Kim BY., Rong X., Zucchi TD., Huang Y. and Goodfellow M.* 2013. Streptomyces chlorus sp. nov. and Streptomyces viridis sp. nov., isolated from soil. Int J Syst Evol Microbiol. 63(5): 1728-1733.
20 Santhanam R., Rong X., Huang Y., Andrews BA., Asenjo JA. and Goodfellow M.* 2013. Streptomyces bullii sp. nov., isolated from a hyper-arid Atacama Desert soil. Antonie Van Leeuwenhoek. 103: 367-373.
21 Santhanam R., Rong X., Huang Y. and Goodfellow M.* 2013. Streptomyces erringtonii sp. nov. and Streptomyces kaempferi sp. nov., isolated from a hay meadow soil. Antonie Van Leeuwenhoek. 103: 79-87.
22 Sun F, Huang L*. (2013) Sulfolobus chromatin proteins modulate strand displacement by DNA polymerase B1. Nucleic Acids Res. 41(17):8182-95.
23
 Ren Y, She Q, Huang L*. (2013) Transcriptomic analysis of the SSV2 infection of Sulfolobus solfataricus with and without the integrative plasmid pSSVi. Virology. 441(2):126-34.
24
 Chu Y, Zhang Z, Wang Q, Luo Y, Huang L*. (2013) Identification and characterization of a highly c onserved crenarchaeal protein lysine methyltransferase with broad substrate specificity. J Bacteriol. 194(24):6917-26.
25
 Niu Guoqing, Li Lei, Wei Junhong, Tan Huarong*. 2013. Cloning, Heterologous Expression and Characterization of the Gene Cluster required for Gougerotin Biosynthesis. Chem & Biology., 20 (1), 34–44. 
26
 Gang Liu, Keith F Chater, Govind Chandra, Guoqing Niu, and Huarong Tan*. 2013. Molecular Regualtion of antibiotic biosynthesis in Streptomyces. Microb Mol Biol R, 77(1): 112-143.
27 Zhang Yanyan？, Pan Guohui？ , Zou Zhengzhong, Fan Keqiang, Yang Keqian* and Tan Huarong*. 2013.  JadR*-mediated feed-forward regulation of cofactor supply in jadomycin biosynthesis. Molecular Microbiology, 90 (4): 884-897.
28
 Niu Guoqing and Tan Huarong*. 2013. Biosynthesis and regulation of secondary metabolites in microorganisms. Sci China Life Sciences, 56 (7): 581-583.
29 Zhang Yanyan, ZOU Zhengzhong, NIU Guoqing & Tan Huarong*. 2013. jadR* and jadR2 act synergistically to repress jadomycin biosynthesis. Sci China Life Sciences, 56 (7): 584-590.
30
 Zhong Xinyu, Tian Yuqing*, Niu Guoqing and Tan Huarong*. 2013. Assembly and features of secondary metabolite biosynthetic gene clusters in Streptomyces ansochromogenes. Sci China Life Sciences, 56 (7): 609-618.
31 Du Deyiao#, Zhu Yu#, Wei Junhon, Tian Yuqing, Niu Guoqing* and Tan  Huarong*. 2013. Engineering of the biosynthetic gene clusters for improved gougerotin and nikkomycin production. Appl Microbiol Biot., 97: 6383–6396
32 Jiang Lingjuan, Wei Junhong, Li Lei, Niu Guoqing* Tan Huarong*. 2013. Combined gene cluster engineering and precursor feeding to improve gougerotin production in Streptomyces graminearus. Appl Microbiol Biotechnol, DOI 10.1007/s00253-013-5270-6.
33
 Wei Junhong, Tian Yuqing, Niu Guoqing*, Tan Huarong*. 2013. GouR, a TetR-family transcriptional regulator, coordinates the biosynthesis and export of gougerotin in Streptomyces graminearus. Appl Environ Microbiol, doi:10.1128/AEM.03003-13.
34
 Bin Ni, Zhou Huang, Zheng Fan, Cheng-Ying Jiang and Shuang-Jiang Liu*. 2013. Comamonas testosteroni uses a chemoreceptor for tricarboxylic acid cycle intermediates to trigger chemotactic responses towards aromatic compounds. Molecular Microbiology, 90(4), 813–823.
35
 Bin Ni, Yun Zhang, Dong-Wei Chen, Bao-Jun Wang and Shuang-Jiang Liu*. 2013. Assimilation of aromatic compounds by Comamonas testosteroni: characterization and spreadability of protocatechuate 4,5-cleavage pathway in bacteria.  Appl Microbiol Biotechnol, 97:6031–6041.
36
 Yu-Fan Wu, Qing-Long Wu and Shuang-Jiang Liu*. Chryseobacterium taihuense sp. nov., isolated from a eutrophic lake, and emended descriptions of the genus Chryseobacterium, Chryseobacterium taiwanense, Chryseobacterium jejuense and Chryseobacterium indoltheticum. Int J Syst Evol Microbiol, 63, 913–919.
37
 De-Feng Li, Jia-Yue Zhang, Yan-Jie Hou, Lei Liu, Yong-Lin Hu, Shuang-Jiang Liu,* Da-Cheng Wang* and Wei Liu*.2013. Structures of aminophenol dioxygenase in complex with intermediate, product and inhibitor. Acta Crystallogr D Biol Crystallogr. 69:32-43.
38 Yi-Qian Liu, Bao-Jun Wang, Nan Zhou and Shuang-Jiang Liu*. 2013. Undibacterium terreum sp. nov., isolated from permafrost soil. Int J Syst Evol Microbiol, 63, 2296–2300.
39 Pan-Pan Li, De-Feng Li, Di Liu, Yi-Ming Liu, Chang Liu, Shuang-Jiang Liu*. 2013. Interaction between DAHP synthase and chorismate mutase endows new regulation on DAHP synthase activity in Corynebacterium glutamicum, Appl Microbiol Biotechnol, 97(24), 10373-10380.
40 Jian-Kang Zhao, Xiao-Ming Li, Ming-Jiang Zhang, Jing-hua Jin, Cheng-Ying Jiang and Shuang-Jiang Liu*. 2013. Parapedobacter pyrenivorans sp. nov., isolated from a pyrene-degrading microbial enrichment, and emended description of the genus Parapedobacter.International Journal of Systematic and Evolutionary Microbiology, 63, 3994–3999.
41 Rao L, Xue Y, Zheng Y, Lu JR, Ma Y*. (2013) A novel alkaliphilic Bacillus esterase belongs to the 13th bacterial lipolytic enzyme family. PLoS One. 8(4): e60645.
42
 Song Y, Xue Y, Ma Y.*. (2013) Global microarray analysis of carbohydrate use in alkaliphilic hemicellulolytic bacterium Bacillus sp. N16-5. PLoS One. 8(1): e54090.
43
 Dekun Guo, Youbao Zhao, Keqian Yang*. Coordination of Glycerol Utilization and Clavulanic Acid Biosynthesis to Improve Clavulanic Acid Production in Streptomyces Clavuligerus. Science China Life Sciences, 2013, 56(7):591–600.
44
 Pauli Kallio, Pekka Patrikainen, Georgiy A. Belogurov, Pekka M？nts？l？, Keqian Yang, Jarmo Niemi, Mikko Mets？-Ketel？*. Tracing the Evolution of Angucyclinone Monooxygenases: Structural Determinants for C-12b Hydroxylation and Substrate Inhibition in PgaE. Biochemistry, 2013, 52(26):4507-4516.
45
 Weishan Wang, Xiao Li, Juan Wang, Sihai Xiang, Xiaozhou Feng, Keqian Yang*. An Engineered Strong Promoter for Streptomycetes.  Applied and Environmental Microbiology, 2013, 79(14):4484-4492.
46 Youbao Zhao, Sihai Xiang, Xida Dai, Keqian Yang*. A simplified diphenylamine colorimetric method for growth quantification. Applied Microbiology and Biotechnology, 2013, 97(11):5069-5077.
47 Ying Liu, Jing-Hua Jin, Hong-Can Liu, and Zhi-Pei Liu*. Dokdonella immobilis sp. nov., isolated from a sequencing batch reactor for treatment of triphenylmethane dye. Int J Syst Evol Microbiol, 2013, 63:1557 - 1561.
48
 Yan-Chun Yao, Qing-Ling Zhang, Ying Liu, Zhi-Pei Liu*. Simultaneous removal of organic matter and nitrogen by a heterotrophic nitrifying-aerobic denitrifying bacterial strain in a membrane bioreactor. Bioresour Technol, 2013, 143: 83-87.
49 Liang-Zi Liu, Ying Liu, Zhu Chen, Hong-Can Liu, Yu-Guang Zhou, and Zhi-Pei Liu*. Ornithinimicrobium tianjinense sp. nov., isolated from a recirculating aquaculture system. Int J Syst Evol Microbiol, 2013, 63: 4489-4494.
50 Shiwei Wang, Matthew R. Parsek, Daniel J. Wozniak, Luyan Z. Ma* (2013) A spider web strategy of type IV pili-mediated migration to build a fiber-like Psl polysaccharide matrix in Pseudomonas aeruginosa biofilms. Environ. Microbiol. 15(8): 2238-2253.
51 Das Palashpriya, Luyan Z. Ma* (2013) Pyocyanin pigment assisting biosurfactant-mediated hydrocarbon emulsification. Int. Biodeter. Biodegr. 85: 278-283.
52 Qing Wei, Luyan Z. Ma* (2013) Biofilm Matrix and Its Regulation in Pseudomonas aeruginosa. Int. J. Mol. Sci. 14(10):20983-21005.
53 Jine Li, Zhengyan Guo, Wei Huang, Xiangxi Meng, Guomin Ai, Gongli Tang and Yihua Chen*. (2013) Mining of a streptothricin gene cluster from Streptomyces sp. TP-A0356 genome via heterologous expression. Sci China Life Sci. 56:619-627.
54 Lei Song, Hongcan Liu, Ying Huang, Xin Dai, and Yuguang Zhou*. Flavobacterium marinum sp. nov., isolated from seawater.Int J Syst Evol Microbiol. 63:3551-3555.
55 Lei Song, Fei Ren, Ying Huang, Xin Dai, and Yuguang Zhou*. Idiomarina indica sp. nov., isolated from seawater. Int J Syst Evol Microbiol. 63:2497-2500.
56 Lang Zhu, Qing Liu, Hongcan Liu, Jianli Zhang, Xiuzhu Dong, Yuguang Zhou*, and Yuhua Xin. Flavobacterium noncentrifugens sp. nov., a psychrotolerant bacterium isolated from glacier meltwater. Int J Syst Evol Microbiol. 63:2032-2037.
57 Jing Yang, Chao Wang, Jinyu Wu, Li Liu, Gang Zhang, Jie Feng*, 2013, Characterization of a multiresistant mosaic plasmid from a fish farm sediment Exiguobacterium sp. isolate reveals aggregation of functional clinic-associated antibiotic resistance genes, Appl Environ Microbiol, 03257-13.
58 Jing Yang, Chao Wang, Chang Shu, Li Liu, Jianing Geng, Songnian Hu, Jie Feng*, 2013, Marine sediment bacteria harbor antibiotic resistance genes highly similar to those found in human pathogens, Microb Ecol, 65(4): 975-981.
59 Zhihai Sui, Wenqing Zhou, Kaihu Yao, Li Liu, Gang Zhang, Yonghong Yang, Jie Feng*, 2013,Complete genome sequence of Streptococcus pneumoniae strain A026, a clinical multidrug-resistant isolate carrying Tn2010, Genome Announc. 1(6). pii: e01034-13. doi: 10.1128/genomeA.01034-13.
60 Lichao Sun, Lizhao Chen, Lixin Sun, Jian Pan, Long Yu, LuLu Han, Zhihua Yang, Yuanming Luo*, and Yuliang Ran*. 2013. Functional screen for secreted proteins by monoclonal antibody library and identification of Mac-2 Binding protein (Mac-2BP) as a potential therapeutic target and biomarker for lung cancer. Mol Cell Proteomics. 12(2): 395-406.
61 Wang Jian, Gao Yong, Teng Kunling, Zhang Jie, Sun Shutao, Zhong Jin*. Restoration of a bioactive lantibiotic suicin from a remnant lan locus of pathogenic Streptococcus suis serotype 2. Appl. Environ. Microbiol. 2013. doi: 10.1128/AEM.03213-13.
62 Guo L, Ding J, Guo R, Hou Y, Wang DC, Huang L*. (2013) Biochemical and structural insights into RNA binding by Ssh10b, a member of the highly conserved Sac10b protein family in Archaea. J Biol Chem. (doi: 10.1074/jbc.M113.521351)
63 Xiaoyun Su, Lina Qin, Zhiyang Dong. 2013. RNAi-Mediated Gene Silencing in Trichoderma: Principles and Applications. Biotechnology and Biology of Trichoderma, ELSEVIER (专著)
64 张志伟，吴胜*．基于细菌群感效应人工构建分子开关。生物工程学报，2013, 29（9）1301-1302。
65 羡明杰,翟磊,仲乃琴,马祎玮,马延和,薛燕芬*. 2013.嗜碱单胞菌的新型羧基转移酶α亚基基因Aa-accA及其抗盐碱性能.微生物学报, 53(8):809-816.

 

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